PolySacDb

A Database of Polysachharide 3D structures

 
By A. Sarkar & S. Pérez
 
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Discover Polysaccharides

Curdlans

 

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Introduction

The generic term « curdlan » refers to extracellular microbial polysaccharides having (1→3)-linked β-D-glucose residue as their repeating units.

 

Curdlan-Fig-1

Fig. 1 Schematic representation of the repeating unit of Curdlan

 

It concerns also, a branched β-(1→3)-glucans with a few β-(1→6) glucose units groups among which is scleroglucan, lentinan, schizophyllan,….  

These polysaccharides often form a triple helical conformation with a tendency to give a physical gel. Scleroglucan, lentinan, schizophyllan,…. all share similar structures and conformations. Their solubility increases in alkaline conditions, but an irreversible helix-coil transition occurs over pH > 12. Many of the polysaccharides belonging to this family are claimed to have anti-tumoral properties. 

Curdlan is produced by the bacterium Alcaligens faecalis var. myxogens 10C3 strain.  X-ray diffraction patterns from oriented specimens reference-in-status-bar, reference-in-status-bar, reference-in-status-bar have led to the identification of three distinct forms:

1. the native specimen (Curdlan I);

2. the hydrated form after annealing at 140° C (Curdlan II),

3. and the dehydrated form after annealing (Curdlan III).

They display significantly different 3-dimensional conformation and chain associations.

 

Curdlan-I

The elucidation of the 3D structure of native curdlan, has been under several investigations  yielding somehow conflicting results. Previous investigations elicited the molecular structure as a six-fold reference-in-status-bar and seven-fold reference-in-status-bar triple helical models. Re-examination of these models based on the observation of a meridional reflection on the sixth layer line resulted in a model where the chain is a six-fold, right-handed single helix reference-in-status-bar. (In this model, the pitch of the single helix is 22.8 Å. and the chain conformation is stabilized by a weak hydrogen bond between O4H…. O5 of 3.14 Å. The helices are oriented in a parallel fashion; they are fully hydrated as indicated by the large number of 250 water molecules per unit cell.

Curdlan-Native_packing_Fig3

Fig. 3 Schematic representation of the structural packing observed in native curdlan I

 

Curdlan-II

The hydrated form of Curdlan as analysed by fiber X-ray diffraction is organized as a triple helical structure of parallel  right-handed strands (c value of 18.78 Å) packed in a triclinic unit cell reference-in-status-bar. The core of the triple helix exhibits triad of interchain hydrogen bonds (O2H…O2 = 2.72 Å). Six water molecules have been located in the unit cell. These water molecules bridge adjacent helices through hydrogen bonds.

 

Curdlan-Fig-4

Fig.4 3D representation of the structure of the packing observed in curdlan II

 

Curdlan-III

The dehydrated form of curdlan is structurally well organized and gives rise  to an X-ray pattern that can be analysed as an hexagonal unit cell, with space group P63 reference-in-status-bar. The layer line spacing is consistent with a 6 fold parallel, triple helix whose pitch is 17.61 Å.  The core of the triple helix exhibits triad of interchain hydrogen bonds (O2H…O2 = 2.72 Å) occurring at successive levels separated by distance of 2.94 Å.

The packing of the chains in the unit cell is maintained by a series of strong hydrogen bonds (having distance between 2.70 to 2.75 Å).

 

 

 
   
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